Posts tagged internship program

Summer 2016 Intern Program

Interns in both Rockville, MD and La Jolla, CA participated in our summer 2016 internship program at the J. Craig Venter Institute (JCVI). A total of 19 interns were hired for the summer 2016 program, selected from 578 applicants. Of the 19 interns, six interns were part of the Genomic Scholar Program (GSP) that is a transition program focusing on the leap from a community college to a four-year college using a combination of activities including undergraduate research experience with mentoring and professional development. The interns were mentored by JCVI faculty and research scientists. Mentors design a research project for each intern depending on their education and prior research experience.

GSP interns Emily Samuels, Rolande Tra Lou, Erica Ngouajio, Raja Venkatappa (mentor), Claudia Najera, Kat Rocha, Tayah Bolt (from La Jolla) and Kenya Platero gather at JCVI Rockville's poster session.

GSP interns Emily Samuels, Rolande Tra Lou, Erica Ngouajio, Raja Venkatappa (mentor), Claudia Najera, Kat Rocha, Tayah Bolt (from La Jolla) and Kenya Platero gather at JCVI Rockville’s poster session.

The involvement of fellows in individually focused research projects was designed to stimulate interest in biomedical research as well as to develop independent critical thinking and communication skills with other team members. In addition to research activities, throughout the summer interns participated in professional development activities that included:  education on the importance of documenting research activities and maintaining accurate laboratory records,  responsible conduct of research, the art of reading scientific literature (interns participated in weekly science journal clubs that aimed to teach how to dissect and interpret scientific literature), and scientific presentations. All the interns participated in JCVI internal presentations and presented their summer research as a poster.

Summer 2016 Interns gather for a picture in the courtyard at JCVI La Jolla.

Summer 2016 Interns gather for a picture in the courtyard at JCVI La Jolla.

A brief summary of 2016 interns summer research projects and their mentors are listed below.

Intern Name(s) Research Project Mentor(s)
Roshni Bhattachara Structural implications of unique substitutions found in a paralysis-associated enterovirus D68 clade Richard Scheuermann
Christopher Henderson Assessment of the Contribution of Ascertainment Cohort to the Genetic Architecture of Alzheimer’s Disease Nicholas Schork
Nathan Lian and Anthony Kang Experimental Validation of ChIP-Seq Identified Centremeres Philip Weyman
Rohith Kodukula The Oral Microbiome of Caries in Children: A Study on Twins Andres Gomez
Ian Lamb Identifying Bacterial Antibiotic Resistance Markers in gut microbes Manolito Torralba
Stephanie Mountain Hydrogen peroxide tolerance variation among different isolates of Acinetobacter baumannli Mark Adams and Meredith Wright
Kathryn O’Nell Cell-Type Clustering in Cortical Brain Cells via differential Expression Analysis of Single Nuclei Richard Scheuermann
Josefa Rivera Identifying new promoter elements in Phaeodactylum tricornutum Vincent Bielinski, Philip Weyman, and Chris Dupont
Jennifer Tuman Pan-Cancer Analysis of Somatic Mutations in DNA Damage Repair Genes Alexandra Buckley  and Nicholas Schork
Ben Grimes Using Synthetic Biology Methods to Engineer Herpes Simples Virus-1 and Mycoplasma mycoides subspecies capri Genomes Suchismita Chandran and Sanjay Vashee
Nicolette Maragh Technical Improvements of Sample Preparation for Proteome Analysis Yanbao Yu
Claudia Najera (GSP fellow) Using Synthetic Biology to Engineer Herpes Simplex Virus Type 1 Lauren Oldfield and Sanjay Vashee
Erica Ngouajio (GSP fellow) Developing a method to optimize sequencing of the Zika virus genomic termini Kari Dilley and Reed Shabman
Tayah Bolt (GSP fellow) Reduction of GUS Activity in Phaeodactylum via Episomal hpRNA Expression Philip Weyman
Alexandra Rocha (GSP fellow) Fibronectin and LRG1 protein interactions in T1D patients Rajagopala Venkatappa
Emily Samuels (GSP fellow) Cloning and Expression of proteins in Zika Virus and Legionella pneumophila in E. coli Keehwan Kwon
Rolande Tra Lou (GSP fellow) Filovirus-human protein-protein interaction Reed Shabman and Rajagopala Venkatappa
Carolina Hatanpaa Constructing a Novel Hidden Markov Model for a tRNA Binding Domain Architecture in the Minimal Cell Granger Sutton and David Haft

2012 JCVI Internship Program Is Now Accepting New Applications

Wow! Another year has gone by.  Its hard to think it is November – almost December with the warm weather we have been enjoying.  However it did not start that way.

Halloween Snow in Maryland!

The 2012 JCVI Internship Program is open to accept spring and summer applications. The application process includes the submission of a resume, essay and transcripts as one PDF file via our online application site. We no longer require letters of recommendation.

Information about the 2012 program can be found at http://www.jcvi.org/cms/education/internship-program/

For summer 2011, we received 544 applicants.  Of these applicants, 30 Interns were selected (10 in San Diego and 20 in Rockville):

  • 7 high school students
  • 9 undergraduate students
  • 13 graduate students
  • 1 secondary teacher

The intern projects ranged across the Institute:

  • A lethal set of virulence factors in uropathogenic E. coli ?
  • Expanding genome transplantation: Streptococcus thermophilus
  • Random Assembly for Use in Swapping as a Tool for Genome Minimization
  • Assembling terminators and promoters
  • Developing Galaxy Tools for the Ordination Analysis of Meta-genomic samples

Good luck to all the applicants this year!

2011 Internship Program Updated

The 2011 JCVI Internship Program is open to accept spring and summer applications. The application process includes the submission of a resume, essay and transcripts as one PDF file via our online application site. We no longer require letters of recommendation.

Information about the 2011 program can be found at http://www.jcvi.org/cms/education/internship-program/

Hopefully this winter, we won’t be hit with two MAJOR snow storms in Maryland that shut all the schools, the federal government and JCVI down for several days the week applications were due! I don’t think they are calling for much snow this year in the Washington Metropolitan Area. Of course, that is not a problem for our colleagues in San Diego.

JCVI Rockville February 2010

JCVI Rockville February 2010

Some interesting facts about the summer internships from last year:

366 applicants applied online
44 Interns were selected:

8 high school students
19 undergraduate students
13 graduate students
4 secondary teachers

12 of the 44 were in San Diego and 32 in Rockville

The intern projects ranged across the Institute:

  • Shewanella oneidensis Growth in Chemostats
  • Purification and Characterization of a Pyrenoid Localized Decarboxylase
  • M. mycoides Minimalization: Combinatorial Assembly
  • Molecular Detection of Temperate Phages and Lysogens in the Marine Environment
  • Comparing the Performance of Short-Read Genome Assemblers
  • Phylogenetic Analysis of Cecal Microbiota in Alcohol-Induced Dysbacteriotic Mice, and Comparison of Pyrosequencing and Sanger Sequencing Technologies
  • Laboratory Research and Environmental Health & Safety (included making a safety video)
  • The Role of Accounting

Good luck to all the applicants this year!

2010 Internship Program Ready to Go

Are you thinking about summer already? We are!! The 2010 Summer Internship Program is open to accept applications.  Last year, we received and reviewed over 300 applications from all over the US and the world for our summer program. Interns were selected to work in most of the research groups throughout the Institute: 18 interns were selected in San Diego and 37 selected in Maryland.

2009 California Summer Interns

2009 California Summer Interns

2009 Maryland Summer Interns

2009 Maryland Summer Interns

Some of the projects interns worked on were the following:

  • Studies of fluorescent DNA uptake in yeast S. cerevisiae
  • The Role of CPSIII in Diatom Growth
  • Study of the Influenza virus and Sequencing Preparation by Amplification
  • Using DNA Sequence to Access Nature’s Pharmacy
  • Functional Annotation and Interaction Network Analysis of Proteins and Domains of Unknown Function in Treponema pallidum
  • Environment, Health and Safety
  • A Look into Arabidopsis

This year we had ten high school students, one high school teacher, and several undergraduate and graduate students in our intern group. The group made individual presentations to JCVI scientists and staff who were all quite impressed with the level of these presentations given their short time with us. The interns in both our East and West coast locations also had a unique opportunity this year to discuss their projects directly with Dr. Venter.  For more information about the 2010 program, visit http://www.jcvi.org/cms/education/internship-program