Posts in category Education

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Happy DNA Day!!

Happy DNA Day!!

This past March, we had a great time participating in the science programs in San Diego. We ended the month with the SD Science Festival with over 30,000 participants. It was such a busy day – I forgot to take pictures. The venue was Petco Park with hundreds of exhibits and hands-on experiences. We had our sediment batteries and microscopes.

With the thaw in Maryland from the multiple snow storms, April is beginning to show signs of spring including the Rockville Science Day. This will take place this Sunday, April 25 at Montgomery College, Rockville Campus. We should be easy to find – look for a big black bus.

In addition to the spring festivals and our school visits, behind the scenes we’ve been busy reviewing/selecting interns and setting up our summer professional development schedule. We had over 360 applicants this year to our internship program from all over the US and world. The blizzards this winter didn’t hold back the applicants. Notifications were be emailed to all on Friday, April 16th to the email address provided on the application. The applicants were so impressive!! Unfortunately we are not able to host everyone.

Our professional development programs were announced this month with support from Life Technologies Foundation. We are fortunate to be able to partner with such generous sponsors to bring these programs to fruition. We are REALLY excited about this year’s programs. They are filling up. California is almost FULL – be sure to send your application in. Maryland has room still – but don’t delay.

On that note, the Genomics Course for Educators on both coasts have biodiversity as the research theme. Our understanding of the diversity of life barely scratches the surfaces (literally). There are so many bacteria on and in our planet, not to mention our bodies – we are just beginning to know they exist – let alone, understand their significance. Even in our macro world, not every species has been catalogued! So much work to be done!!!

We are partnering with the Canadian Barcoding of Life Network with several other organizations in the MacArthur HASTAC Digital Media and Learning Competition. The project is to develop a fun science social networking site to encourage students to participate as citizen scientists and participate in developing a digital list of all organisms around the country and world. Please review the video at the link below and provide comments. It is important that the comments are added via the HSTAC site – the YouTube comments do not carry over. These comments are used in the decision making for funding.

http://www.dmlcompetition.net/pligg/story.php?title=400

Thanks for your support!!!

And, again, Happy DNA Day!!!

A Positive Charge

I’m thinking of the day’s schedule school visit, the activity and the positive charge it will produce in me and the students.  I get so excited during our school visits.  It’s like the feeling I get on Saturday morning while watching my favorite cartoons. (Yes, I still watch cartoons)  The first class I ever taught was at Hine Jr. High School in Washington D.C. in 2005 and the activity was Mystery of the Crooked Cell. 

After the classroom visits,  the Science Fairs, After School Programs, NIST Adventure in Science and Take Your Child to Work Day programs, in this my 5th year as Mobile Lab Driver and Teaching Assistant, I still get excited when working with a group of students.  I’m the preverbal kid in a candy store with the keys and I even make the candy!

 As I ponder this, another thought comes to mind, in our effort to reinforce specific standards of science and exposure to FUN!  I have come to understand the importance of the program and the positive charge on students, teachers and the community.  In a time of educational cut backs, the layoff of teachers and the closing of schools, the DiscoverGenomic! Science Education Program is a sure sign that we have not left any child behind.

Thanks for a positive charge DG! Science Education Program!

We Had Fun with Genomics!!

BEWiSE March 6 & 13 at JCVI

BEWiSE March 6 & 13 at JCVI

Wow! It’s been an exciting week!! Crystal Snowden and I flew to San Diego Friday, March 5th – jumped off the plane and the fun began!  We went straight to the lab and set up for BEWiSE and prepped for Expanding Your Horizons (EYH).  We are really fortunate to have such a great team in the San Diego facility.

Saturday started early with Crystal Snowden heading out to EYH at University of San Diego.  I did not go, but Crystal said it was an AWESOME time.  She worked with 45 young ladies.  The students learned about Winograsky columns and how the environmental organisms contributed to the microbial fuel cells and waste water treatment.  They prepared microscope slides by staining bacteria and viewed them under the microscopes.  The participants ranged in age from 12 to 16.  Unfortunately, Crystal was too busy to take pictures!  The quote of the day was, “This is AWESOME!”

Pipetting in the lab

Pipetting in the lab

While Crystal was busy at USD, Orianna Bretschger, Shino Ishii, Angela Wu, Eric Son and I hosted 16 young ladies from BEWiSE. Our day started early too at 9:00, running through 2:30.  We learned about genomics, microbial fuel cells and waste water treatment.  In the labs, the girls mastered pipetting and DNA extraction culminating with DNA isolation from the Winograsky columns.  The day ended with setting up PCR of the DNA isolates.  It was like riding a lab train.

Orianna Bretschger is helping get the mud samples - stinky!!

Orianna Bretschger is helping get the mud samples - stinky!!

During the week, Crystal finished the students’ samples through library construction and the second PCR.  The samples then traveled east to Rockville for sequencing, where Monica Thomas picked up the process.  She prepped them for sequencing and came in at 3:00AM Saturday morning to pull the data off the sequencers for us.  Wow! That is team work AND dedication.

We started again Saturday, March 13th early at 9:00AM.  I knew the samples worked, but the BEWiSE participants didn’t.  We poured our agarose gels, used a new buffer that enables the gels to run faster, checked out the transformation plates – ending with a BLAST search of their sequence DATA.    Of the eight groups, six had data – the sequencing of the 16s RNA gene matched uncultured bacteria.  Cool!  Some were related to Cyanobacteria – even cooler!  It was a great time for young ladies and JCVI staff.  We get invigorated too!!!

How could the week get better? In the middle of the week, we also exhibited at the San Diego Science Alliance High Tech Fair as I noted in my last posting.  We brought the Winograsky columns, the sediment tanks and the microscopes.  We recruited a few more JCVI staff and scientists to help – Sue Fields, Greg Wanger, Jeff McLean, Adi Ramon and Jeff McQuaid.  Under the scopes we had some estuary water with algae, small bacteria and paramecium – cool.  For our younger guests, we also had Daphnia to look at.  With the scopes, we were able to draw participants’ interest and then talk about our batteries and water reclamation.  Tuesday night, we had participants of all ages – 800 in two-hours.  Wednesday, there were at least 1,000 students being bus’d in from all over San Diego.  The booth was rockin’ and rollin’ – and it wasn’t just because the booth next to us had Guitar Hero™.
Orianna Brestchger at the SDSA High Tech Fair!

Orianna Bretschger at the SDSA High Tech Fair!

I flew back to Maryland Sunday – exhausted.  It was a GREAT week!  I hope to see all the BEWiSE girls applying for internships in the next year or two.  Don’t forget to tell your teachers what you did!

For more pictures – visit our Facebook page.

Watch for us at the SD Science Festival on MARCH 27th!!

Having Fun with Genomics

I am the generation after landing on the moon. As a child, I don’t recall having any science inspiration. I was fortunate to have parents that made it possible for me and my siblings to get a very good education. I went to a small parochial school outside of Washington, DC. It was a great school but we had no labs and so my exposure to science was limited at best.  I always liked school and did well, especially in math.

Then I went to Elizabeth Seton High School and had a bumpy road of it. I had two strong teachers mentoring me, Sr. Lani, my homeroom teacher, and Sr. Mary Marguerite in Pre Calculus and Calculus. Though I still had no real strong interest in science, I decided to take AP Biology in senior year. Ms. D’Apolito made us read science journals. Wow! That was unbelievably hard!! I struggled. But in this class, Ms. D’Apolito brought her love of science and research experience into the classroom. I vividly remember reading a journal article about E. coli and thought, “This is so cool! I want to go into research.” And my friends thought I was crazy. So off to college I went, majoring in nursing.

Staying locally, I entered the Catholic University of America, planning to concentrate in nursing. My first year chemistry was taught by this incredible teacher, Dr. Diane Bunce, who is currently a Nifty Fifty with the USA Science and Engineering Festival. She made chemistry exciting and alive!! My second semester, I knew I really wanted to study science. Through many discussions with Dr. Bunce, I realized with a chemistry degree I could do anything from make new plastics to make new cosmetics (her sister worked at a major cosmetic company). Finally, I decided I really wanted Biochemistry – I love photosynthesis!! From there, I continued to work with Dr. Bunce who specialized in chemistry education. I was a teaching assistant (TA) for her professional development in the summer – working with high school chemistry teachers – and I TA’d in her non-science major chemistry class. Dr. Bunce is one of my greatest mentors.

From there, I graduated and had another extraordinary opportunity to come to work in what was described as a “controversial” lab at NIH. I had no idea what I was walking into – but am extremely grateful that Dr. Venter gave me the opportunity to work in his lab. From there, you can read Dr. Venter’s book. I participated in the greatest scientific revolution – the beginnings of genomics!! Furthermore, I have gotten back to my roots – I get to work with teachers, students and “non-science” community to excite them about science and genomics.

Why do I share my story? To explain the difference between my school science experience and the opportunities that exists today for kids of all ages. I never had the opportunity to participate in science enrichment programs because very few existed then. This coming week, JCVI is presenting at two awesome events and hosting a group of young women for a special program in San Diego. First, March 6 and 13, we will be hosting BEWiSE, Better Education for Women in Science & Engineering. BEWiSE is a program of the San Diego Science Alliance and makes a difference for talented young women who are encouraged to contribute to science and engineering professions. Twenty 9th graders will have the opportunity to explore the microbial diversity from soil in a sediment battery by working with JCVI’s Orianna Bretschger. Wow! I never did this in high school or college.

We are also presenting on March 6th at the “Expanding Your Horizon Conference” at the University of San Diego. My colleague, Crystal Snowden, will be hosting a workshop discussing the sediment fuel cell and exploring the bacteria present. This conference reaches out to young girls too! What fun to see the critters under the microscope!

Finally, we will be exhibiting along with several other organizations in the area at the San Diego Science Alliance High Tech Fair. Here, we will have the sediment batteries, microscopes for viewing sea water microbes and soil bacteria, plus slides of diatoms found in Antarctica. Did you really think that electricity could be generated from mud, let alone, sludge??

I wish I had the opportunity to go to programs like this when I was young! You never know when that spark will be lit – in a classroom, at a science festival, watching the waves or a discussion over dinner. Finally, a big thank you goes to all my mentors I’ve had in my life: Sr. Lani, Sr. Mary Marguerite, Ms. D’Apolito, Dr. Bunce and Dr. Venter!

Have you thanked your teachers and mentors lately?

Watch for pictures next week.

High Impact Science in Antarctica

The Mertz Glacier as seen in 2007, extending 75 km out into the Southern Ocean

Antarctica was in the news this weekend when a 97 kilometer long iceberg the size of Luxembourg collided with the floating Mertz Glacier, breaking the famous glacier off at the base and generating a 2500 sq. kilometer iceberg. Each of these behemoths weigh several hundred billion tons, so the impact must have been quite a crunch!

Iceberg B9B collides with Mertz Glacier Tongue

At right is an image taken February 20th, several days after the impact: the broken Mertz Glacier Tongue is on the left side of the photo, and the colliding B9B iceberg is near the center-right.   The Mertz Glacier, which was sheared off at the base, was a significant barrier to westward drifting sea ice.  The Mertz Glacier is on the George V coast of East Antarctica, a region is famous for its high-velocity katabatic winds: sustained wind velocities at nearby Dumont D’Urville have reached 199 m.p.h!  These winds blow the pack ice out to sea, and because of the blocking geometry of the Mertz Glacier, this area generally remains ice-free all winter.

Fluorescence map of the Mertz Polynya in December 2007 (mertz Glacier is in lower right). Surface blooms are in red, and marine metagenomic samples were taken in areas marked with a star.

In the Austral summer of 2007, scientists from the J. Craig Venter Institute visited this ice-free area, or polynya, as part of the International Polar Year’s Census of Antarctic Marine Life (CAML). Because sunlight can freely penetrate the water column, polynyas are areas of enhanced productivity. Diatoms and other phytoplankton form massive springtime blooms, supporting whales, penguins, and much of the Antarctic food chain.  Above is a fluorescence ‘bloom map’ of the Mertz Polynya, just west of the Mertz Glacier. Our expedition on board the Aurora Australis attempted to capture a biological snapshot of the entire region, and Jeff Hoffman and I were able to collect samples ranging from thick blooms of  Phaeocystis antarctica to oligotrophic cold-water upwellings at the base of the Mertz Glacier.

CTD Rosette being deployed at the base of the Mertz Glacier to collect a sample from 1320m deep

CTD Rosette being deployed at the base of the Mertz Glacier to collect a sample from 1320m in depth

The region around the Mertz Glacier is equally famous as one of three regions where Antarctic Bottom Water is formed (the other two are the Ross and Weddell Seas).  Bottom water is created where saline water is extruded from newly formed sea ice.  This cold dense water sinks from the surface and becomes distributed into all of the world’s major ocean basins. Because the sea-ice in a polynya is continuously formed and blown out to sea, there is near continual production of brine and bottom water.  While in the Mertz Ploynya, Jeff and I used the ships 24-bottle CTD rosette to sample some of this bottom water, and one of the samples came from Buchanan Bay, right next to the area where the glacier split.  This sample came from a depth of 1320m, and may yield insight into bacterial activities at the base of the water column.  Additional deep water samples were taken in the Adelie Depression , the Mertz Bank, and the Mertz Depression, and one sample came from a depth of 3,690 m in the Southern Ocean.

Almost half of the water samples we collected have been sequenced using 454 sequencing technology and are in the process of annotation.  This biological data will form an important baseline as this region undergoes rapid change: loss of the protective geometry of the Mertz Glacier will likely cause changes in the formation of the Mertz Polynya, influencing both the biology of the annual spring bloom and the dynamics of bottom water formation.  Stay tuned for more updates on this exciting event and on the microbiology of the region.

Tafelbergs floating in the morning light, Mertz Polynya, December 2007

Rocky Hill MS Explodes with Science

Mrs. Jill Maisch is the 7th Grade Science teacher at Rocky Hill Middle School who is responsible for the explosion with Science in Clarksburg MD. She, along with new teachers and veteran teachers to the DiscoverGenomics! Science Education Program attended our annual professional development this past summer.  The workshop not only exposes the teacher to genomics but prepares them for our mobile lab visits during that school year.  The teachers are key to preparing their students for an exciting opportunity to learn about advance techniques in the DiscoverGenomics! Science Education Program.  We commit to four visits with the DG! Mobile Lab to our middle schools when teachers participate in our workshop, as a result it makes for an explosive team!

Jill Maisch

Jill hard at work!

Our first visit to Rocky Hill Middle School on January 26th  taught the students how to use one of the many pieces of equipment they will use constantly in the program, the micropipette; as part of our “Practice Measuring Liquids” activity where they learn how to measure small amounts of colored liquid to create the visual spectrum.

Mrs. Maisch’s class was thrilled to learn about the pipette and that one million party goers could in fact share one liter of coke…of course in very, very one microliter small glasses.  Despite the cold and the snow from the two snow storms last week, we still exploded with Science! BOOM! I’m looking forward to our next visit on March 4th and the activity,” Case of the Bloody Crowbar” surely it will be as explosive as our first.

Science Festivals

With spring around the corner (or at least we hope), there are several upcoming science festivals. These festivals are designed to provide students and families opportunities to find out what is happening in local science research institutes, universities and companies. These organizations are expanding the text books beyond our imaginations. These are EXCITING times in science – we are just scratching the surface of understanding the diversity of life on our planet, beginning to understand how to boot up synthetic cell, and how to better care for us and our planet.

SDSA High Tech Fair 2009: Dr. Bretschger and students

We are looking forward to participating in the SDSA High Tech Fair, March 9 & 10. Stop by our booth. It should be easy to find – with a unique sulfur odor coming from the sediment battery Dr. Bretschger created related to her work. At the end of March, we will exhibit with SD Science Festival Expo Day, March 27, which brings together over 150 hands-on science activities and stage performances for people of all ages and interest levels!

Switching coasts, April 25, JCVI will be participating at the Rockville Science Day. Another fun day of hands-on science activities and demonstrations! Look for the Mobile Lab there!!

DiscoverGenomics! Mobile Lab

DiscoverGenomics! Mobile Lab

Finally, this fall, we are excited to participate in the first ever USA Science & Engineering Festival Expo on the National Mall! The Mobile Lab will be there with other labs for a mobile lab CONVOY!! Well, maybe not as security might not like that, but we will be there.  Explore science & engineering with hundreds of free, hands-on activities and over 40 science shows on three different stages. The two-day Expo is perfect for teens, children and their families, and anyone with a curious mind who is looking for a weekend of fun and discovery. Build an underwater robot, chat with a Nobel Laureate, explore the science behind the magic of Hogwarts Academy and see a car that drives itself. From bugs to birds, kitchen chemistry to computer games, environmental monitoring to electronic music – the Expo has something for everyone and is completely free of charge. The Expo is the pinnacle event of the inaugural USA Science & Engineering Festival to be held in the greater Washington D.C. area October 10-24, 2010. The USA Science & Engineering Festival is a collaboration of over 500 of the nation’s leading science and engineering organizations. For more information on all Festival events and how you can get involved, visit www.usasciencefestival.org

I hope everyone can make it out to these great events.  If you are scientists or have a science-related career, please be sure to get out there and volunteer.  National Lab Day has provided a great national portal to volunteer.  There are never enough science fair judges, career speakers or mentors, so contact your local school to find out how you can help.

2010 Internship Program Ready to Go

Are you thinking about summer already? We are!! The 2010 Summer Internship Program is open to accept applications.  Last year, we received and reviewed over 300 applications from all over the US and the world for our summer program. Interns were selected to work in most of the research groups throughout the Institute: 18 interns were selected in San Diego and 37 selected in Maryland.

2009 California Summer Interns

2009 California Summer Interns

2009 Maryland Summer Interns

2009 Maryland Summer Interns

Some of the projects interns worked on were the following:

  • Studies of fluorescent DNA uptake in yeast S. cerevisiae
  • The Role of CPSIII in Diatom Growth
  • Study of the Influenza virus and Sequencing Preparation by Amplification
  • Using DNA Sequence to Access Nature’s Pharmacy
  • Functional Annotation and Interaction Network Analysis of Proteins and Domains of Unknown Function in Treponema pallidum
  • Environment, Health and Safety
  • A Look into Arabidopsis

This year we had ten high school students, one high school teacher, and several undergraduate and graduate students in our intern group. The group made individual presentations to JCVI scientists and staff who were all quite impressed with the level of these presentations given their short time with us. The interns in both our East and West coast locations also had a unique opportunity this year to discuss their projects directly with Dr. Venter.  For more information about the 2010 program, visit http://www.jcvi.org/cms/education/internship-program

Antarctic epiblog: leaving McMurdo

Ice formation outside McMurdo Station

Ice formation outside McMurdo Station

After we took our samples out at the ice edge, we returned to  McMurdo Station for several intense days of demobilization.   We had to return all of the large drills, power equipment and camping gear, and spent a considerable time preparing our own gear for shipment back to the United States.  Our samples and some of our critical gear will go by air transport to Port Huemene in California, and the rest will be shipped back to the US by icebreaker during the January sealift.  In order to preserve the DNA and RNA of our plankton samples, we froze them in the field in liquid nitrogen: these samples will be air-shipped on dry ice to the J. Craig Venter Institute, where both DNA genetic code and RNA messages will be sequenced and decoded.

Mak in the Crary lab looking at some of Dawn's psychrophilic bactera

Mak in the Crary lab looking at some of Dawn's psychrophilic bactera

Mak Saito and his group will similarly take the phytoplankton protein samples back to the Woods Hole Oceanographic Institution and use a mass spectrometer to identify the protein fragments. The protein fragments .  Mak’s group also had some success culturing psychrophilic bacteria: psychrophiles are organisms which live around the freezing point, though many of the mechanisms which allow them to survive are unknown.  By

close-up of the Petri dish

close-up of the Petri dish

bringing back some live bacterial cultures to the laboratory, we will be able to grow them and study how both bacteria and larger phytoplankton can tolerate cycles of freezing and thawing, and also how the various proteins and enzymes in them remain flexible enough to function.

One student wrote in and asked if plants only grew in the sea ice and not on land.  the best answer I can give is that the temperatures in the sea ice are relatively stable: at the ice-water interface, the temperature is a constant 28 degrees Fahrenheit (-1.8 Celsius). If organisms can adapt to

Antarctica and Mars have much in common

Antarctica and Mars have much in common

that environment, then conditions are relatively stable for life. In contrast, life on land is relatively harsh, and in one day the soil surface can go from warm and sunlit to being raked by freezing 50 mph winds. I understand that there is a type of moss which grows near the streams in the McMurdo Dry Valleys, and I understand that there are some lichens around Cape Royds, but other than that the conditions are too harsh for land plants: all of the plant activity is in the ocean, growing as phytoplankton!

Close-up of desert pavement in Antarctica: Winds are so strong that small grains are blown away, leaving only gravel to 'pave' the surface of the soil

Close-up of desert pavement in Antarctica: Winds are so strong that small grains are blown away, leaving only gravel to 'pave' the surface of the soil

This brings up a good point: we love to hear your questions and comments, particularly from students and the public.  if you have been following this blog, and have and found it interesting, or want to know more about any of the topics covered here (polar biology, plankton, life in Antarctica), you can

Invite us to your classroom!

Invite us to your classroom!

leave us a message at the bottom of this blog page.  For the educators and classrooms which have been following this blog, let us know if you would be interested in having one of our scientists visit and give a presentation on polar science to your class: we love to talk about our work, and would be thrilled with the opportunity to talk to your students.

So what lies ahead? Our frozen samples arrive next week, and starting in January I will extract the DNA and begin the long process of preparing the samples for sequencing.  Collecting the samples was just the beginning, and we will be processing the samples and data for months to come – keep an eye on this website for periodic updates on our discoveries.

I’ll finish off this post with a picture I took of Castle Rock on our last night in Antarctica. While we were all eager to return home, we hadn’t seen the sun set once in three weeks, and it is moments of sublime beauty like this picture of Castle Rock glowing at midnight which keep polar biologists coming back year after year.  Enjoy!

Castle Rock under the midnight sun

Castle Rock glowing under the midnight sun

Station IV: The Ice Edge

Brian sets up an ice anchor while Jeff Hoffman flakes out a belay rope.  The ice edge is in the background.

Brian sets up an ice anchor while Jeff Hoffman flakes out a belay rope. Jeff and I belayed Brian to the ice edge, where he tested the ice stability.

Our last station in our Ross Sea transect was out at the ice edge, about two miles north of our previous station, Station III.  We were interested to see how plankton in the open polynya were different  from the phytoplankton we isolated from areas locked in sea-ice.  Polynyas are ice-free areas of open ocean and are highly productive, and the photosynthetic activity of diatoms and other phytoplankton of the polar regions are thought to be important components of the global carbon cycle.

the sea-ice thickness where we were working. A weddell seal kep an eye on us while we worked.

The bottom of the sea ice can be seen in this picture. A nearby Weddell Seal watched us.

We left our heavy vehicles at Station III and took lighter snowmobiles out towards the open water. The Ross Sea polynya is one of the largest polynyas in Antarctica, and the sight of open water after weeks in Antarctica’s frozen environment was totally thrilling. Distant pack ice dampened the incoming Southern Ocean swell, so there weren’t large waves breaking over the ice, and in the distance we could see icebergs floating on the horizon. Near the waters edge, we stopped the snowmobiles short and set up a belay station.  Using ropes, we belayed Brian out to the edge of the ice, where he drilled to test the thickness of the ice. The thickness was just over two meter, and if you peered over the edge, you could just make out the underside of the sea ice.  We unpacked our sample gear and Jeff and I started to set up a filtration station.

Emperor penguins pop over the ice edge and toboggan towards us

Emperor penguins pop over the ice edge and toboggan wildly across the slick ice

As we were connecting up our tubing and air compressor, we heard some noise from the ice edge, and suddenly dozens of emperor penguins began boiling up out of the water and landing directly onto the ice.  They landed with big plops on their bellies, and quickly tobogganed away from the ice edge, splashing through the slush and creating a total rucus.  It is doubtful an approaching penguin can see the top side of the ice – they pop onto the ice blind, so standing near the ice edge carried the non-negligible risk of getting knocked over by a 70 pound flying penguin!

Emperors gather as we set up our filter station

Emperors gather as we set up our filter station

We set up our plankton filtration station, and as we worked our audience of flightless birds grew.  Emperor penguins are extremely curious animals, and they fearlessly let us know that we were in their domain.  At times they would waddle around our filters and pumps, silently looking over our set-up and seemingly unperturbed by our noisy gasoline-powered air compressor.

Beach chair moment: Jeff and Brian wait for our filters while penguins walk about and survey our work

Beach chair moment: Jeff and Brian wait for our filters while penguins waddle and survey our work

Other times they would just stand around and preen, and they were an endless source of amusement.  Just as at the previous stations,  we collected three separate samples of plankton. One sample is for DNA shotgun sequencing, which we will use to identify the total complement of  genes present in the seawater: this can almost be thought of as the genomic potential of the system.  Our second sample is mRNA, which is a the total transcriptome of the plankton: this will tell us what genes are actively being used at the time we collected the sample.  We are also taking a third sample for analysis of the proteome, or the protein products of the genome.

Adelie penguins jump onto ice edge and join in the science

Adelie penguins pop onto the ice and join the science

It takes us about seven hours to filter sufficient volumes of water and harvest enough plankton for these analysis, so in the meantime we sat out on beach chairs, kept an eye to make sure our hoses and pumps didn’t freeze, and watched the penguin parade.  Partway through the day a large group of Adelie penguins swam over and joined the scene.  Adelie penguins are significantly smaller than Emperor penguins, so when they emerge from the water, they have so much momentum they literally shoot into the air, landing on their feet before tobogganing to safety.

Eventually it became a penguin party

An Adelie (foreground) and Emperor penguin social

The afternoon eventually devolved into a multi-species penguin party, with the birds occasionally waddling over to our filtration racks to see what the red-jacketed aliens were doing, and otherwise just hanging out together, Adelies and Emperors. We were surprised to see this casual behavior, and there was rarely any hostility between the two species of penguins – though I think I saw an Emperor swat an Adelie out of the way once.

Pair of courting emperor penguins

Pair of courting emperor penguins

Perhaps I’m going a bit overboard with the penguins, but it was truly amazing to watch them while we went about our work, and they generated endless photogenic moments. Many of the emperor pairs were courting: the male stand directly in front of a female, head down, and then slowly raise his head while issuing his song.  The female would follow the motion, until they both held  heads in the air, and they would hold that posture, ostensibly sizing each other up for potential worthiness as a mate.

While we were packing our gear the emperor penguins sensed the show was ove,r and they queued up to return to the sea.

While we were packing our gear the emperor penguins sensed the show was over and they queued up to return to the sea.

Towards evening we finished the last of our sampling, and as we began to unhook the filtration lines and hoses, the Emperor penguins sensed the show was over, and began to queue up on the ice.  After they were all in an orderly line, they tobogganed back off into the ocean, leaving us to pack up our gear and take our samples back to our mobile research sled.  We now had four stations in a transect, starting at land’s edge and traversing out across the frozen Ross Sea to the open water at the Ross Sea Polynya. We were all tired from the effort, and looking forward to some fresh food and heated rooms back in McMurdo Station.